R Package Updates: Celebrating Independence Day

We had a couple of new package requests. I'm taking the occasion, as we approach the holiday celebrating American independence, to update the other R packages. There are still complications building newer rstan, I log in every month or so and try for a few hours. Otherwise I think we are working:

Remember, that packages you have in your HOME folder, such as R/x86/3.3 or R/x86/3.4 will PRECEDE the ones I provide systemwide. So if you have an old one, then that's what R will use for you. Because your packages are in version-specific folder (note 3.3 and 3.4 on end of path), it WILL be necessary for you to install packages for R 3.4 if you update the environment file (described next).

It is important to set your R selection in the environment (fully described here: R Modules: Super Exciting New Updates) because, if you don't, then you might launch a parallel job that will use different/inconsistent packages and versions of R on different nodes. This was a very hard-to-understand problem in the new cluster. So configure one of the environment scripts "crmda_env.sh" (for R 3.3) and "crmda_env-test.sh" (for R 3.4). I am thinking hard on what new pleasant names we could use for those scripts.

For R-3.4, the package set that comes along with the R environment we provide (via crmda_env-test.sh) are in the second block here, while the ones provided by central sysadmin are in the first block (with indicated directory). The ones in the first set, which I do not administer, are out of date. There's a philosophical problem here. Some people think the packages should never be updated for replication purposes, but generally I tend to want the newest. If users want older packages, they can install in $HOME/R, of course. The out-of-date-packages problem is more serious in R-3.3 that 3.4, and maybe users ought to adopt that anyway.

Right now, here is the situation:

/panfs/pfs.local/software/install/MRO/3.4.0/microsoft-r/3.4/lib64/R/library
KernSmooth  2.23-15
MASS    7.3-47
Matrix  1.2-9
MicrosoftR  3.4.0.0068
R6  2.2.0
RUnit   0.4.26
RevoIOQ 8.0.7
RevoMods    11.0.0
RevoUtils   10.0.4
RevoUtilsMath   10.0.0
base    3.4.0
boot    1.3-19
checkpoint  0.4.0
class   7.3-14
cluster 2.0.6
codetools   0.2-15
compiler    3.4.0
curl    2.6
datasets    3.4.0
deployrRserve   9.0.0
doParallel  1.0.10
foreach 1.4.4
foreign 0.8-67
grDevices   3.4.0
graphics    3.4.0
grid    3.4.0
iterators   1.0.8
jsonlite    1.4
lattice 0.20-35
methods 3.4.0
mgcv    1.8-17
nlme    3.1-131
nnet    7.3-12
parallel    3.4.0
png 0.1-7
rpart   4.1-11
spatial 7.3-11
splines 3.4.0
stats   3.4.0
stats4  3.4.0
survival    2.41-3
tcltk   3.4.0
tools   3.4.0
utils   3.4.0
/panfs/pfs.local/work/crmda/tools/mro/3.4/site-library
ADGofTest   0.3
AER 1.2-5
Amelia  1.7.5
BH  1.66.0-1
BMA 3.18.8
BradleyTerry2   1.0-8
CVST    0.2-2
Cairo   1.5-9
Cubist  0.2.2
DBI 1.0.0
DCluster    0.2-7
DEoptimR    1.0-8
DRR 0.0.3
Devore7 0.7.6
DiagrammeR  1.0.0
DiceKriging 1.5.5
ENmisc  1.2-7
Ecdat   0.3-1
Ecfun   0.1-7
Formula 1.2-3
GPArotation 2014.11-1
HistData    0.8-4
Hmisc   4.1-1
HyperbolicDist  0.6-2
ISOcodes    2018.06.29
ISwR    2.0-7
Iso 0.0-17
JM  1.4-8
JMdesign    1.1
JavaGD  0.6-1
Kendall 2.2
Lahman  6.0-0
LearnBayes  2.15.1
MCMCpack    1.4-3
MCPAN   1.1-21
MEMSS   0.9-2
MNP 3.1-0
MPV 1.53
MatchIt 3.0.2
Matching    4.9-3
MatrixModels    0.4-1
ModelMetrics    1.1.0
MplusAutomation 0.7-2
NLP 0.1-11
NMF 0.21.0
PASWR   1.1
PolynomF    1.0-2
R2HTML  2.3.2
R2OpenBUGS  3.2-3.2
R6  2.2.2
RColorBrewer    1.1-2
RCurl   1.95-4.10
RGtk2   2.20.35
RMySQL  0.10.15
RPostgreSQL 0.6-2
RSQLite 2.1.1
RSvgDevice  0.6.4.4
RUnit   0.4.32
RandomFields    3.1.50
RandomFieldsUtils   0.3.25
Rcmdr   2.4-4
RcmdrMisc   1.0-10
Rcpp    0.12.17
RcppArmadillo   0.8.600.0.0
RcppEigen   0.3.3.4.0
RcppRoll    0.3.0
Rd2roxygen  1.6.2
Rmpi    0.6-7
Rook    1.1-1
SAScii  1.0
SASmixed    1.0-4
SQUAREM 2017.10-1
SemiPar 1.0-4.2
SnowballC   0.5.1
SoDA    1.0-6
SparseM 1.77
StanHeaders 2.17.2
StatDataML  1.0-26
SweaveListingUtils  0.7.7
TH.data 1.0-8
TTR 0.23-3
TeachingDemos   2.10
UsingR  2.0-6
VGAM    1.0-5
VIM 4.7.0
XML 3.98-1.11
Zelig   5.1.6
abind   1.4-5
acepack 1.4.1
actuar  2.3-1
ada 2.0-5
ade4    1.7-11
akima   0.6-2
alr3    2.0.8
amap    0.8-16
aod 1.3
ape 5.1
aplpack 1.3.2
arm 1.10-1
arules  1.6-1
assertthat  0.2.0
backports   1.1.2
base64enc   0.1-3
bayesm  3.1-0.1
bcp 4.0.2
bdsmatrix   1.3-3
bestglm 0.37
betareg 3.1-0
bibtex  0.4.2
biglm   0.9-1
bindr   0.1.1
bindrcpp    0.2.2
bit 1.1-14
bit64   0.9-7
bitops  1.0-6
blob    1.1.1
bnlearn 4.3
brew    1.0-6
brglm   0.6.1
broom   0.4.4
caTools 1.17.1
cairoDevice 2.25
callr   2.0.4
car 3.0-0
carData 3.0-1
caret   6.0-80
cellranger  1.1.0
censReg 0.5-26
checkmate   1.8.5
chron   2.3-52
cli 1.0.0
clipr   0.4.1
clue    0.3-55
clv 0.3-2.1
cocorresp   0.3-0
coda    0.19-1
coin    1.2-2
colorspace  1.3-2
combinat    0.0-8
copula  0.999-18
corpcor 1.6.9
covr    3.1.0
crayon  1.3.4
crosstalk   1.0.0
cubature    1.4
data.table  1.11.4
dbplyr  1.2.1
ddalpha 1.3.4
debugme 1.1.0
deldir  0.1-15
descr   1.1.4
dichromat   2.0-0
digest  0.6.15
dimRed  0.1.0
diptest 0.75-7
distr   2.6.2
dlm 1.1-5
doBy    4.6-1
doMC    1.3.5
doMPI   0.2.2
doParallel  1.0.11
doSNOW  1.0.16
dotCall64   0.9-5.2
downloader  0.4
dplyr   0.7.6
dse 2015.12-1
e1071   1.6-8
earth   4.6.3
ecodist 2.0.1
effects 4.0-2
egcm    1.0.12
eha 2.5.1
eiPack  0.1-7
emplik  1.0-3
estimability    1.3
evaluate    0.10.1
expint  0.1-5
expm    0.999-2
fBasics 3042.89
fUnitRoots  3042.79
faraway 1.0.7
fastICA 1.2-1
fastmatch   1.1-0
fda 2.4.7
ffmanova    0.2-2
fields  9.6
flexmix 2.3-14
forcats 0.3.0
foreach 1.4.4
formatR 1.5
forward 1.0.3
gam 1.15
gamlss  5.1-0
gamlss.data 5.0-1
gamlss.dist 5.0-6
gamm4   0.2-5
gbm 2.1.3
gclus   1.3.1
gdata   2.18.0
gee 4.13-19
geepack 1.2-1
geoR    1.7-5.2
geoRglm 0.9-11
geometry    0.3-6
ggm 2.3
ggplot2 2.2.1
glmc    0.2-4
glmmBUGS    2.4.2
glmmML  1.0.3
glmnet  2.0-16
glmpath 0.98
glue    1.2.0
gmodels 2.18.1
gmp 0.5-13.1
gower   0.1.2
gpclib  1.5-5
grf 0.10.0
gridBase    0.4-7
gridExtra   2.3
grpreg  3.1-4
gsl 1.9-10.3
gss 2.1-9
gsubfn  0.7
gtable  0.2.0
gtools  3.8.1
haven   1.1.2
hexbin  1.27.2
highr   0.7
hms 0.4.2
htmlTable   1.12
htmltools   0.3.6
htmlwidgets 1.2
httpuv  1.4.4.2
httr    1.3.1
hunspell    2.9
igraph  1.2.1
ineq    0.2-13
influence.ME    0.9-9
influenceR  0.1.0
inline  0.3.15
inum    1.0-0
iplots  1.1-7.1
ipred   0.9-6
irlba   2.3.2
iterators   1.0.9
itertools   0.1-3
janeaustenr 0.1.5
jomo    2.6-2
jpeg    0.1-8
jsonlite    1.5
kernlab 0.9-26
knitr   1.20
kutils  1.46
labeling    0.3
laeken  0.4.6
languageR   1.4.1
lars    1.2
later   0.7.3
latticeExtra    0.6-28
lava    1.6.2
lavaan  0.6-1
lavaan.survey   1.1.3.1
lazyeval    0.2.1
leaps   3.0
libcoin 1.0-1
lme4    1.1-17
lmeSplines  1.1-10
lmec    1.0
lmm 1.2
lmtest  0.9-36
locfit  1.5-9.1
logspline   2.1.11
longitudinal    1.1.12
longitudinalData    2.4.1
lpSolve 5.6.13
ltm 1.1-1
lubridate   1.7.4
magic   1.5-8
magrittr    1.5
manipulate  1.0.1
manipulateWidget    0.10.0
maps    3.3.0
maptools    0.9-2
markdown    0.8
matrixcalc  1.0-3
maxLik  1.3-4
mboost  2.9-0
mcgibbsit   1.1.0
mclust  5.4.1
mcmc    0.9-5
mda 0.4-10
memisc  0.99.14.9
memoise 1.1.0
mi  1.0
micEcon 0.6-14
mice    3.1.0
microbenchmark  1.4-4
mime    0.5
miniUI  0.1.1.1
minqa   1.2.4
misc3d  0.8-4
miscTools   0.6-22
mitml   0.3-5
mitools 2.3
mix 1.0-10
mixtools    1.1.0
mlbench 2.1-1
mnormt  1.5-5
modelr  0.1.2
modeltools  0.2-21
msm 1.6.6
multcomp    1.4-8
munsell 0.5.0
mvProbit    0.1-8
mvbutils    2.7.4.1
mvtnorm 1.0-8
network 1.13.0.1
nloptr  1.0.4
nnls    1.4
nor1mix 1.2-3
norm    1.0-9.5
nortest 1.0-4
np  0.60-8
numDeriv    2016.8-1
nws 1.7.0.1
nycflights13    1.0.0
openssl 1.0.1
openxlsx    4.1.0
ordinal 2018.4-19
orthopolynom    1.0-5
pan 1.6
pander  0.6.1
partDSA 0.9.14
party   1.3-0
partykit    1.2-2
pbivnorm    0.6.0
pbkrtest    0.4-7
pcaPP   1.9-73
permute 0.9-4
pillar  1.2.3
pixmap  0.4-11
pkgKitten   0.1.4
pkgconfig   2.0.1
pkgmaker    0.27
plm 1.6-6
plogr   0.2.0
plotmo  3.4.1
plotrix 3.7-2
pls 2.6-0
plyr    1.8.4
pmml    1.5.4
pmmlTransformations 1.3.1
png 0.1-7
polspline   1.1.13
polycor 0.7-9
polynom 1.3-9
portableParallelSeeds   0.97
ppcor   1.1
pracma  2.1.4
praise  1.0.0
prettyunits 1.0.2
processx    3.1.0
prodlim 2018.04.18
profileModel    0.5-9
promises    1.0.1
proto   1.0.0
proxy   0.4-22
pscl    1.5.2
psidR   1.5
pspline 1.0-18
psych   1.8.4
purrr   0.2.5
quadprog    1.5-5
quantmod    0.4-13
quantreg    5.36
qvcalc  0.9-1
rJava   0.9-10
randomForest    4.6-14
randomForestSRC 2.6.1
rattle  5.1.0
rbenchmark  1.0.0
rbugs   0.5-9
rda 1.0.2-2
readr   1.1.1
readstata13 0.9.2
readxl  1.1.0
recipes 0.1.3
registry    0.5
relimp  1.0-5
rematch 1.0.1
repr    0.15.0
reprex  0.2.0
reshape 0.8.7
reshape2    1.4.3
rex 1.1.2
rgenoud 5.8-2.0
rgexf   0.15.3
rgl 0.99.16
rio 0.5.10
rlang   0.2.1
rlecuyer    0.3-4
rmarkdown   1.10
rms 5.1-2
rngtools    1.3.1
robustbase  0.93-1
rockchalk   1.8.111
roxygen2    6.0.1
rpart.plot  2.2.0
rpf 0.59
rprojroot   1.3-2
rrcov   1.4-4
rstan   2.17.3
rstudioapi  0.7
rvest   0.3.2
sandwich    2.4-0
scales  0.5.0
scatterplot3d   0.3-41
segmented   0.5-3.0
selectr 0.4-1
sem 3.1-9
semTools    0.5-0
setRNG  2013.9-1
sets    1.0-18
sfsmisc 1.1-2
shapefiles  0.7
shiny   1.1.0
simsem  0.5-14
slam    0.1-43
sm  2.2-5.5
smoothSurv  2.0
sna 2.4
snow    0.4-2
snowFT  1.6-0
sourcetools 0.1.7
sp  1.3-1
spData  0.2.9.0
spam    2.2-0
spatialCovariance   0.6-9
spdep   0.7-7
splancs 2.01-40
stabledist  0.7-1
stabs   0.6-3
startupmsg  0.9.4
statmod 1.4.30
statnet.common  4.1.4
stepwise    0.3
stopwords   0.9.0
stringi 1.2.3
stringr 1.3.1
strucchange 1.5-1
subselect   0.14
survey  3.33-2
systemfit   1.1-22
tables  0.8.4
tcltk2  1.2-11
tensorA 0.36
testthat    2.0.0
texreg  1.36.23
tfplot  2015.12-1
tframe  2015.12-1
tibble  1.4.2
tidyr   0.8.1
tidyselect  0.2.4
tidytext    0.1.9
tidyverse   1.2.1
timeDate    3043.102
timeSeries  3042.102
tinytex 0.5
tis 1.34
tm  0.7-4
tokenizers  0.2.1
topicmodels 0.2-7
tree    1.0-39
triangle    0.11
trimcluster 0.1-2
trust   0.1-7
tseries 0.10-45
ucminf  1.1-4
urca    1.3-0
utf8    1.1.4
vcd 1.4-4
vegan   2.5-2
viridis 0.5.1
viridisLite 0.3.0
visNetwork  2.0.4
waveslim    1.7.5
webshot 0.5.0
whisker 0.3-2
withr   2.1.2
wnominate   1.2.5
xml2    1.2.0
xtable  1.8-2
xts 0.10-2
yaml    2.1.19
zip 1.0.0
zipfR   0.6-10
zoo 1.8-2

And the session info was:

> sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server release 6.4 (Santiago)

Matrix products: default
BLAS: /panfs/pfs.local/software/install/MRO/3.4.0/microsoft-r/3.4/lib64/R/lib/libRblas.so
LAPACK: /panfs/pfs.local/software/install/MRO/3.4.0/microsoft-r/3.4/lib64/R/lib/libRlapack.so

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RevoUtilsMath_10.0.0

loaded via a namespace (and not attached):
[1] compiler_3.4.0   RevoUtils_10.0.4 tools_3.4.0    

For R-3.3, the packages are provided via an environment file (crmda_env.sh). The package list will be mostly the same, however the effort to compile the latest versions of these packages fails: c("inum", "Rmpi", "partykit", "OpenMx", "mboost"). Rmpi is a foundational piece an I'll try to figure out what is wrong. Anyway, here is the firecracker 3.3 package list.

/panfs/pfs.local/software/install/MRO/3.3/microsoft-r/3.3/lib64/R/library
KernSmooth  2.23-15
MASS    7.3-45
Matrix  1.2-7.1
MicrosoftR  3.3.2.0000
R6  2.2.0
RUnit   0.4.26
RevoIOQ 8.0.6
RevoMods    10.0.0
RevoUtils   10.0.2
RevoUtilsMath   10.0.0
base    3.3.2
boot    1.3-18
checkpoint  0.3.18
class   7.3-14
cluster 2.0.5
codetools   0.2-15
compiler    3.3.2
curl    2.2
datasets    3.3.2
deployrRserve   9.0.0
doParallel  1.0.10
foreach 1.4.3
foreign 0.8-67
grDevices   3.3.2
graphics    3.3.2
grid    3.3.2
iterators   1.0.8
jsonlite    1.1
lattice 0.20-34
methods 3.3.2
mgcv    1.8-15
nlme    3.1-128
nnet    7.3-12
parallel    3.3.2
png 0.1-7
rpart   4.1-10
spatial 7.3-11
splines 3.3.2
stats   3.3.2
stats4  3.3.2
survival    2.39-5
tcltk   3.3.2
tools   3.3.2
utils   3.3.2
/panfs/pfs.local/work/crmda/tools/mro/3.3/site-library
ADGofTest   0.3
AER 1.2-5
Amelia  1.7.5
BH  1.66.0-1
BMA 3.18.8
BradleyTerry2   1.0-8
CVST    0.2-2
Cairo   1.5-9
Cubist  0.2.2
DBI 1.0.0
DCluster    0.2-7
DEoptimR    1.0-8
DRR 0.0.3
Devore7 0.7.6
DiagrammeR  1.0.0
DiceKriging 1.5.5
ENmisc  1.2-7
Ecdat   0.3-1
Ecfun   0.1-7
Formula 1.2-3
GPArotation 2014.11-1
HistData    0.8-4
Hmisc   4.1-1
HyperbolicDist  0.6-2
ISOcodes    2018.06.29
ISwR    2.0-7
Iso 0.0-17
JGR 1.8-4
JM  1.4-8
JMdesign    1.1
JavaGD  0.6-1
Kendall 2.2
Lahman  6.0-0
LearnBayes  2.15.1
MCMCglmm    2.25
MCMCpack    1.4-3
MCPAN   1.1-21
MEMSS   0.9-2
MNP 3.1-0
MPV 1.53
MatchIt 3.0.2
Matching    4.9-3
MatrixModels    0.4-1
ModelMetrics    1.1.0
MplusAutomation 0.7-2
NLP 0.1-11
NMF 0.21.0
OpenMx  2.8.3
PASWR   1.1
PBSmapping  2.70.5
PolynomF    1.0-2
R2HTML  2.3.2
R2OpenBUGS  3.2-3.2
R6  2.2.2
RColorBrewer    1.1-2
RCurl   1.95-4.10
RGtk2   2.20.31
RMySQL  0.10.15
RPostgreSQL 0.6-2
RSQLite 2.1.1
RSvgDevice  0.6.4.4
RUnit   0.4.32
RandomFields    3.1.50
RandomFieldsUtils   0.3.25
Rcmdr   2.4-1
RcmdrMisc   1.0-7
Rcpp    0.12.17
RcppArmadillo   0.8.600.0.0
RcppEigen   0.3.3.4.0
RcppRoll    0.3.0
Rd2roxygen  1.6.2
Rmpi    0.6-6
Rook    1.1-1
SAScii  1.0
SASmixed    1.0-4
SQUAREM 2017.10-1
SemiPar 1.0-4.2
SnowballC   0.5.1
SoDA    1.0-6
SparseM 1.77
StanHeaders 2.17.2
StatDataML  1.0-26
SweaveListingUtils  0.7.7
TH.data 1.0-8
TTR 0.23-3
TeachingDemos   2.10
UsingR  2.0-6
VGAM    1.0-3
VIM 4.7.0
XML 3.98-1.11
Zelig   5.1.6
abind   1.4-5
acepack 1.4.1
actuar  2.3-1
ada 2.0-5
ade4    1.7-11
adehabitat  1.8.20
akima   0.6-2
alr3    2.0.8
amap    0.8-16
aod 1.3
ape 5.1
aplpack 1.3.2
arm 1.10-1
arules  1.5-4
assertthat  0.2.0
backports   1.1.2
base64enc   0.1-3
bayesm  3.1-0.1
bcp 4.0.2
bdsmatrix   1.3-3
bestglm 0.37
betareg 3.1-0
bibtex  0.4.2
biglm   0.9-1
bindr   0.1.1
bindrcpp    0.2.2
bit 1.1-14
bit64   0.9-7
bitops  1.0-6
blob    1.1.1
bnlearn 4.3
brew    1.0-6
brglm   0.6.1
broom   0.4.4
caTools 1.17.1
cairoDevice 2.25
callr   2.0.4
car 3.0-0
carData 3.0-1
caret   6.0-80
cellranger  1.1.0
censReg 0.5-26
checkmate   1.8.5
chron   2.3-52
cli 1.0.0
clipr   0.4.1
clue    0.3-55
clv 0.3-2.1
cocorresp   0.3-0
coda    0.19-1
coin    1.2-2
colorspace  1.3-2
combinat    0.0-8
commonmark  1.5
copula  0.999-18
corpcor 1.6.9
covr    3.1.0
crayon  1.3.4
crosstalk   1.0.0
cslogistic  0.1-3
cubature    1.4
data.table  1.11.4
dbplyr  1.2.1
ddalpha 1.3.4
debugme 1.1.0
deldir  0.1-15
desc    1.2.0
descr   1.1.4
dichromat   2.0-0
digest  0.6.15
dimRed  0.1.0
diptest 0.75-7
distr   2.6.2
dlm 1.1-5
doBy    4.6-1
doMC    1.3.5
doMPI   0.2.2
doParallel  1.0.11
doSNOW  1.0.16
dotCall64   0.9-5.2
downloader  0.4
dplyr   0.7.6
dse 2015.12-1
e1071   1.6-8
earth   4.6.3
ecodist 2.0.1
effects 4.0-2
egcm    1.0.12
eha 2.5.1
eiPack  0.1-7
emplik  1.0-3
estimability    1.3
evaluate    0.10.1
expint  0.1-5
expm    0.999-2
fBasics 3042.89
fUnitRoots  3042.79
faraway 1.0.7
fastICA 1.2-1
fastmatch   1.1-0
fda 2.4.7
ffmanova    0.2-2
fields  9.6
flexmix 2.3-14
forcats 0.3.0
foreach 1.4.4
formatR 1.5
forward 1.0.3
gam 1.15
gamlss  5.1-0
gamlss.data 5.0-1
gamlss.dist 5.0-6
gamm4   0.2-5
gbm 2.1.3
gclus   1.3.1
gdata   2.18.0
gee 4.13-19
geepack 1.2-1
geoR    1.7-5.2
geoRglm 0.9-11
geometry    0.3-6
ggm 2.3
ggplot2 2.2.1
glmc    0.2-4
glmmBUGS    2.4.2
glmmML  1.0.3
glmnet  2.0-16
glmpath 0.98
glue    1.2.0
gmodels 2.18.1
gmp 0.5-13.1
goftest 1.1-1
gower   0.1.2
gpclib  1.5-5
grf 0.10.0
gridBase    0.4-7
gridExtra   2.3
grpreg  3.1-4
gsl 1.9-10.3
gss 2.1-9
gsubfn  0.7
gtable  0.2.0
gtools  3.8.1
haven   1.1.2
hexbin  1.27.2
highr   0.7
hms 0.4.2
htmlTable   1.12
htmltools   0.3.6
htmlwidgets 1.2
httpuv  1.4.4.2
httr    1.3.1
hunspell    2.9
igraph  1.2.1
ineq    0.2-13
influence.ME    0.9-9
influenceR  0.1.0
inline  0.3.15
iplots  1.1-7.1
ipred   0.9-6
irlba   2.3.2
iterators   1.0.9
itertools   0.1-3
janeaustenr 0.1.5
jomo    2.6-2
jpeg    0.1-8
jsonlite    1.5
kernlab 0.9-26
knitr   1.20
kutils  1.46
labeling    0.3
laeken  0.4.6
languageR   1.4.1
lars    1.2
later   0.7.3
latticeExtra    0.6-28
lava    1.6.2
lavaan  0.6-1
lavaan.survey   1.1.3.1
lazyeval    0.2.1
leaps   3.0
lme4    1.1-17
lmeSplines  1.1-10
lmec    1.0
lmerTest    3.0-1
lmm 1.2
lmtest  0.9-36
locfit  1.5-9.1
logspline   2.1.11
longitudinal    1.1.12
longitudinalData    2.4.1
lpSolve 5.6.13
ltm 1.1-1
lubridate   1.7.4
magic   1.5-8
magrittr    1.5
manipulate  1.0.1
manipulateWidget    0.10.0
maps    3.3.0
maptools    0.9-2
markdown    0.8
matrixStats 0.53.1
matrixcalc  1.0-3
maxLik  1.3-4
mcgibbsit   1.1.0
mclust  5.4.1
mcmc    0.9-5
mda 0.4-10
mediation   4.4.6
memisc  0.99.14.9
memoise 1.1.0
mi  1.0
micEcon 0.6-14
mice    3.1.0
microbenchmark  1.4-4
mime    0.5
miniUI  0.1.1.1
minqa   1.2.4
misc3d  0.8-4
miscTools   0.6-22
mitml   0.3-5
mitools 2.3
mix 1.0-10
mixtools    1.1.0
mlbench 2.1-1
mnormt  1.5-5
modelr  0.1.2
modeltools  0.2-21
msm 1.6.6
multcomp    1.4-8
munsell 0.5.0
mvProbit    0.1-8
mvbutils    2.7.4.1
mvtnorm 1.0-8
neighbr 1.0
network 1.13.0.1
nloptr  1.0.4
nnls    1.4
nor1mix 1.2-3
norm    1.0-9.5
nortest 1.0-4
np  0.60-8
numDeriv    2016.8-1
nws 1.7.0.1
nycflights13    1.0.0
openssl 1.0.1
openxlsx    4.1.0
ordinal 2018.4-19
orthopolynom    1.0-5
pan 1.6
pander  0.6.1
partDSA 0.9.14
party   1.3-0
pbivnorm    0.6.0
pbkrtest    0.4-7
pcaPP   1.9-73
permute 0.9-4
pillar  1.2.3
pixmap  0.4-11
pkgKitten   0.1.4
pkgconfig   2.0.1
pkgmaker    0.27
plm 1.6-6
plogr   0.2.0
plotmo  3.4.1
plotrix 3.7-2
pls 2.6-0
plyr    1.8.4
pmml    1.5.4
pmmlTransformations 1.3.1
png 0.1-7
polspline   1.1.13
polyclip    1.9-0
polycor 0.7-9
polynom 1.3-9
portableParallelSeeds   0.97
ppcor   1.1
pracma  2.1.4
praise  1.0.0
prettyunits 1.0.2
processx    3.1.0
prodlim 2018.04.18
profileModel    0.5-9
promises    1.0.1
proto   1.0.0
proxy   0.4-19
pscl    1.5.2
psidR   1.5
pspline 1.0-18
psych   1.8.4
purrr   0.2.5
quadprog    1.5-5
quantmod    0.4-13
quantreg    5.36
qvcalc  0.9-1
rJava   0.9-10
randomForest    4.6-14
randomForestSRC 2.6.1
rattle  5.1.0
rbenchmark  1.0.0
rbugs   0.5-9
rda 1.0.2-2
readr   1.1.1
readstata13 0.9.2
readxl  1.1.0
recipes 0.1.3
registry    0.5
relimp  1.0-5
rematch 1.0.1
repr    0.15.0
reprex  0.2.0
reshape 0.8.7
reshape2    1.4.3
rex 1.1.2
rgenoud 5.8-2.0
rgexf   0.15.3
rgl 0.99.16
rio 0.5.10
rlang   0.2.1
rlecuyer    0.3-4
rmarkdown   1.10
rms 5.1-2
rngtools    1.3.1
robustbase  0.93-1
rockchalk   1.8.111
roxygen2    6.0.1
rpart   4.1-13
rpart.plot  2.2.0
rpf 0.59
rprojroot   1.3-2
rrcov   1.4-4
rstan   2.17.3
rstudio 0.98.978
rstudioapi  0.7
rvest   0.3.2
sandwich    2.4-0
scales  0.5.0
scatterplot3d   0.3-41
segmented   0.5-3.0
selectr 0.4-1
sem 3.1-9
semTools    0.5-0
setRNG  2013.9-1
sets    1.0-18
sfsmisc 1.1-2
shapefiles  0.7
shiny   1.1.0
simsem  0.5-14
slam    0.1-40
sm  2.2-5.5
smoothSurv  2.0
sna 2.4
snow    0.4-2
snowFT  1.6-0
sourcetools 0.1.7
sp  1.3-1
spData  0.2.9.0
spam    2.2-0
spatialCovariance   0.6-9
spatialkernel   0.4-23
spatstat    1.56-0
spatstat.data   1.3-1
spatstat.utils  1.8-2
spdep   0.7-7
splancs 2.01-40
stabledist  0.7-1
stabs   0.6-3
startupmsg  0.9.4
statmod 1.4.30
statnet.common  4.1.4
stepwise    0.3
stopwords   0.9.0
stringi 1.2.3
stringr 1.3.1
strucchange 1.5-1
subselect   0.14
survey  3.33-2
survival    2.42-4
systemfit   1.1-22
tables  0.8.4
tcltk2  1.2-11
tensor  1.5
tensorA 0.36
testthat    2.0.0
texreg  1.36.23
tfplot  2015.12-1
tframe  2015.12-1
tibble  1.4.2
tidyr   0.8.1
tidyselect  0.2.4
tidytext    0.1.9
tidyverse   1.2.1
timeDate    3043.102
timeSeries  3042.102
tinytex 0.5
tis 1.34
tkrplot 0.0-23
tm  0.7-4
tokenizers  0.2.1
topicmodels 0.2-7
tree    1.0-39
triangle    0.11
trimcluster 0.1-2
truncnorm   1.0-7
trust   0.1-7
tseries 0.10-45
ucminf  1.1-4
urca    1.3-0
utf8    1.1.4
vcd 1.4-4
vegan   2.5-2
viridis 0.5.1
viridisLite 0.3.0
visNetwork  2.0.4
waveslim    1.7.5
webshot 0.5.0
whisker 0.3-2
withr   2.1.2
wnominate   1.2.5
xgboost 0.71.2
xml2    1.2.0
xtable  1.8-2
xts 0.10-2
yaml    2.1.19
zip 1.0.0
zipfR   0.6-10
zoo 1.8-2
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